Beast code in Giters

shilpagarg's starred repositories

Fast, sensitive and accurate integration of single-cell data with Harmony

Language:RNOASSERTION515 27 219

Single-cell Transcriptome and Regulome Analysis Pipeline

Language:CGPL-3.0274 12 103

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

Language:C++NOASSERTION271 23 106

A very fast interval tree data structure

Language:RustMIT110 8 9

A tool for Racon polishing of miniasm assemblies

Language:PythonGPL-3.072 8 11

H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)

Language:PythonMIT68 6 27

Graph based multi genome aligner

Language:PythonMIT45 13 29

An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.

Language:CMIT43 4 14

Hackathon team: gene expression analysis for Covid-19

Language:TeXMIT9 12 35