shf43's repositories
dragonsc
Deterministic annealing gaussian mixtures models for single cell RNAseq
FIt-SNE
Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)
genstats
Statistics course for JHU Genomic Data Science Sequence
magic
MAGIC - imputation and de-noising single-cell RNA seq data sets
MIMOSCA
A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
Phylostratigraphy
Pipeline for Phylostratigraphy
ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
pysb
Python framework for Systems Biology modeling
pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
qiime2
Official repository for the QIIME 2 framework.
R_snippets
R Scripts for general data analysis and plotting
RERconverge
Analysis of convergence between organismal traits and DNA/protein sequences