Robert Sheridan's repositories
annotation-tools
tools to allow annotation of vcf and maf files from a number of centers and merging the results
cbioportal
The cBioPortal for Cancer Genomics
cbioportal-core
Legacy cBioPortal Core
cbioportal-frontend
React Frontend of cBioPortal :tada:
cBioPortal-new-study-assistant
A tool to help match attributes in a new study to attributes in existing studies on the cBioPortal
clinical-data-dictionary
Clinical Attribute Web Service for retrieving clinical attribute names and metadata.
clinical-data-normalization
Tools and data relating to clinical data normalization efforts.
code-examples
publicly accessible code examples to discuss
genome-nexus
Interpreting cancer genomics data š§¬
genome-nexus-annotation-pipeline
Library and tool for annotating MAF files using Genome Nexus Webserver API
genome-nexus-java-api-client
Java API Client for Genome Nexus
go-sort-demo
graphical demonstration of parallel running sort routines
knowledgesystems-k8s-deployment
Documentation and configuration files for deploying the Knowledge Systems Group's services using kubernetes
oncokb-annotator
Annotates variants in MAF with OncoKB annotation.