shenyang1981's repositories
ansible-for-devops
Ansible for DevOps examples.
ansible-real-life
Ansible Real Life Scenarios and PoC Practices
ARMOR
Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
aws.s3
Amazon Simple Storage Service (S3) API Client
bio-ansible
Proof of concept to use ansible + Lmod to deploy a bioinformatics server
dl-visuals
Over 200 figures and diagrams of the most popular deep learning architectures and layers FREE TO USE in your blog posts, slides, presentations, or papers.
elabftw
:notebook: eLabFTW is the most popular open source electronic lab notebook for research labs.
guideseq
Analysis pipeline for the GUIDE-seq assay. For news, see:
GUIDEseq-1
A Bioconductor package for analyzing GUIDE-seq and CIRCLE-seq dataset to identify genome-wide offtargets using genome editing technology CRISPR
imgcrypt
OCI Image Encryption Package
jina
Cloud-native neural search framework for 𝙖𝙣𝙮 kind of data
MAESTRO
Single-cell Transcriptome and Regulome Analysis Pipeline
mc
MinIO Client is a replacement for ls, cp, mkdir, diff and rsync commands for filesystems and object storage.
MuSiC
Multi-subject Single Cell Deconvolution
nextflow-fastp-shiny
a shiny frontend for the nextflow-fastp pipeline
nf-tower
Nextflow Tower system
og-aws
📙 Amazon Web Services — a practical guide
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
scRNA-seq_notes
A list of scRNA-seq analysis tools
shinyforms
Easily create questionnaire-type forms with Shiny
Subtitles-generator
generates transcript for video from link
the-economist-ebooks
经济学人(含音频)、纽约客、自然、新科学人、卫报、科学美国人、连线、大西洋月刊、新闻周刊、国家地理等英语杂志免费下载、订阅(kindle推送),支持epub、mobi、pdf格式, 每周更新. The Economist 、The New Yorker 、Nature、The Atlantic 、New Scientist、The Guardian、Scientific American、Wired、Newsweek magazines, free download and subscription for kindle, mobi、epub、pdf format.
tutorials
Cloud security tutorials and best practices
vg
tools for working with genome variation graphs
workshops-setup_cloud_analytics_machine
Tips and Tricks to setup a cloud machine for Analytics and Data Science with R, RStudio and Shiny Servers, Python and JupyterLab