shenweima

wheat-methylation

Analysis wheat methylation data using BS-Seeker2 and CGmapTools

docker-galaxy-genome-annotation

:whale: Galaxy Docker Image with Tools for Genome Annotation

GEAN

This toolkit deals with GEnomic sequence and gene structure ANnotation files between inbreeding lines and species.

pretzel

Javascript full-stack framework for Big Data visualisation and analysis

AgRenSeq

bamdst

a lightweight bam file depth statistical tool

draw_genes

A flexible python program for generating figures from regions of the genome.

filter-BlastXML-result

filter BlastXML result

flo

Same species annotation lift over pipeline.

funannotate

Eukaryotic Genome Annotation Pipeline

Functional_haplotype_GWAS

Selecting closely-linked SNPs based on local epistatic effects for haplotype construction improves power of association mapping

gameofthrones

Colour Palette for R inspired in the TV show Game of Thrones

mamba

A FAST drop-in replacement for the conda command-line utility, in C++,

mikado

Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.

Peregrine

Peregrine: Fast Genome Assembler Using SHIMMER Index

Plasticity

Rice flowering time plasticity

PopLDdecay

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files

PSI-Sigma

PSI-Sigma

public

python-highcharts

A simple translation layer between Python and Javascript for Highcharts projects (highcharts, highmaps, and highstocks).

python_project

the test project

QTLseqr

QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis

QUILT

RNAsamba

Coding score calculation using deep learning

smoove

structural variant calling and genotyping with existing tools, but, smoothly.

strawberry

A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)

vsearch

Versatile open-source tool for metagenomics

WGSc

WheatCo-expression

build co-expression network for wheat

WheatGeneAnnotation

Aim to improve wheat gene structure annotation using multiple transcriptome data