shenmengyuan's repositories
RNA_seq_Biotrainee
DEG analysis and KEGG/GO enrichment analysis
Python_Biotrainee
Panda Shen's Python learning scripts
NGS-pipeline
By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
Yun-Gui_plateau_lake
An overview of analysis pipeline to metagenome of each lake samples at different trophic levels, including the steps of sampling, DNA Extraction, sequencing, assembly, CDS finding, CDS abundance calculating, taxonomy, functional assignment and statistical analysis
linux-command
Linux命令大全搜索工具，内容包含Linux命令手册、详解、学习、搜集。
Novo_comparison
comparative genomics of degradative Novosphingobium
ensembl-pipeline
Job management for the Ensembl Genebuild pipeline
Metagenome_Panda_Shen
Panda Shen's metagenome learing note notebook
trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
labs
Rmd source files for the HarvardX series PH525x
Metagenome_Freshwater_Reservoirs
Reconstruction of Diverse Verrucomicrobial Genomes from Metagenome Datasets of Freshwater Reservoirs
MetaPalette
Metagenomic profiling and phylogenetic distances via common kmers
miscperlscripts
Small collection of random useful perl scripts
ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
RNA-seq-scripts
This is a collection of small scripts built by the Lenz lab to make RNA sequencing tasks more efficient.
SEM_panda
Structural Equation Model
shenmengyuan.github.io
Mengyuan's blog
taxon-bin-dist-utils
taxon-bin-dist-utils: utils to associate taxonomy profiling and functional profiling