Sheetal Giri's repositories
nepali-calendar-js
Javascript functions for converting between Nepali and Gregorian calendar systems, Available as an NPM package: https://www.npmjs.com/package/nepali-calendar-js
integrating-scRNA-and-scATAC-data
Student group project with R scripts for OMICs integration
merfish-image-processing
Segment cells from merfish imaging data in Python
nerve-segmentation-classification
Student project with teammate John P. Flynn : Collection of experimental U-net architectures for multitask learning on nerve ultrasound images.
awesome-conformal-prediction
A professionally curated list of awesome Conformal Prediction videos, tutorials, books, papers, PhD and MSc theses, articles and open-source libraries.
basenji
Sequential regulatory activity predictions with deep convolutional neural networks.
deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
DNABERT
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
EffectivePyTorch
PyTorch tutorials and best practices.
enformer-pytorch-efficient
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
genome-transformer
Pretrained efficient transformers on genomes -- WIP
Linear-Algebra-Basics
Linear Algebra Fundamentals for Machine Learning
Maxflow-Algorithms
Implementation of Maxflow Algorithms(python)
Meta-Learning-Papers
Meta Learning / Learning to Learn / One Shot Learning / Few Shot Learning
mit-deep-learning
Tutorials, assignments, and competitions for MIT Deep Learning related courses.
nn-zero-to-hero
Neural Networks: Zero to Hero
Python
All Algorithms implemented in Python
python-workshop-2021-day-2
Python workshop exercise prepared for Impacters
pytorch-fcn
PyTorch Implementation of Fully Convolutional Networks. (Training code to reproduce the original result is available.)
seurat-disk
Interfaces for HDF5-based Single Cell File Formats
single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
stringi
THE String Processing Package for R (with ICU)
tensorflow-deep-learning
All course materials for the Zero to Mastery Deep Learning with TensorFlow course.
Transformer-Explainability
[CVPR 2021] Official PyTorch implementation for Transformer Interpretability Beyond Attention Visualization, a novel method to visualize classifications by Transformer based networks.