Dmitrii Kriukov's repositories
Lp_trigonometry
This small repo is for representation of different metric spaces trigonometry.
CUR_decomposition
An implementation of "ancient" stochastic CUR matrix decomposition algorithm with example of using.
TAD-Laplacian-Identification
Python algorithm for Hi-C TAD identification based on graph Laplacian method (also known as Fiedler vector method)
ALEC_stats
This is a temporary repository for writing python functions for ALEC platform.
persistent_homology_python
Fully python + numba(jit) very basic algorithm to find homology groups and build persistence diagram from data.
Reprogramming_meta
This is a repository for code of reprogramming meta-analysis research project
Aging_Brain_Mice
Study an aging chromatin in mouse cortex tissue
BioDataHack_2019
This repository for demonstration of results taken at #BioDataHack Russian Hackaton.
CompAgingBot
Test Bot
DeepDicty
Deep learning reveals new Dictyostelium chromatin properties
mergegram_python
Python implementation of mergegram algorithm from the paper.
ProLongUI
UI for ProLong blockchain-driven data market.
reprogramming_models
This repository contains my attempts to reproduce different cell reprogramming mathematical models based from different papers.
test_kriukov
Test the hypothesis that molecules with similar structures cause similar gene expression perturbations.
topology_loop_caller
Chromatin loop caller using TDA based on Hi-C data