shanshi

clustering_investigation

Multiple scripts that visualize clustering data, generate heatmaps, produce statistics of Seurat data and compare clustering of different algorithms.

systems_biology_coursework

GitHub repo for completing systems biology coursework module

utils

Useful bioinformatics scripts including BAM and VCF file naming convention conversion, contain removal, reordering and sorting BAM files and VCF + BAM chromosome comparison.

contribution-guide

A guide to repositories I have contributed to in my career.

testing_episcanpy

Script running RNA seq steps: normalization, calculating variability, clustering and visualisation with a new package called episcanpy.

mcl

MCL, the Markov Cluster algorithm, also known as Markov Clustering, is a method and program for clustering weighted or simple networks, a.k.a. graphs.

batchbench