msprime
msprime is a Python API and command line interface for simulating the
coalescent with recombination. Please see the
documentation
for further information and
installation instructions.
If you would like to help make msprime better, please see the
developer documentation
to get started.
If you are looking for help on a specific issue or would like to ask a
question to fellow msprime users, please send an email to the
mailing list. By asking
questions on the mailing list, you can help to build a searchable knowledge
base.
If you use msprime in your work, please cite the PLOS Computational
Biology paper.
See here for
full citation details.
NOTE FOR DEVELOPERS
The codebase is currently in a transitional phase, where tskit and msprime are being
separated. As a result, some documentation is inaccurate and there are a lot of rough edges.
Everything will be cleaned up nicely for the next release of the packages. In the meantime,
thanks for your patience!