ShahCompBio's repositories
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classifycopynumber-1
Classify Copy Number Amplifications and Deletions
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alhena-docker
Docker files for Alhena
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alhena-loader
Loader for Alhena
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MultiModalMuSig.jl
A Julia package for extracting mutation signatures using topic models
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viz-flask-boilerplate
Boilerplate for Flask powered dashboard
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viz-html-boilerplate
Boilerplate to create standalone HTML Jinja template dashboards
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sankey_clone
Interactive sankey plot for h5ad files
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hmmcopy_refs
Scripts to generate gc and map files for hmmcopy
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hmmcopy_utils
Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.
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alhena-lite
Local version of Alhena dashboard
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spectrum_tme
preprocessing and figures for SPECTRUM TME paper
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mebsuta_django_api
Mebsuta Backend
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fitness_timeseries_figures
Jupyter notebook for timeseries plotting.
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dlp_qc_utils
QC utils for DLP data
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