Patrick Shaffer's repositories
hard_spheres
Sample from hard sphere configurations using score based generative models
antismash
antiSMASH
data_incubator
a simple web app to display some figures I created
dpd_membrane_simulation
module for simulating flow through porous media with dissipative particle dynamics
ESM_protein_physics
Use protein language model ESM to train models of protein physics
fcs_analysis
analysis of flow cytometry data
ising_model_app
javascript ising model simulation
membrane_simulations
simulations of fluid flow through porous membranes
steinhardtforce
an openmm extension that applies a force to steinhardt parameters
flask_practice
learning how to use flask for simple web programming with python
github_api_analysis
analysis of data from github api
haskell
learning haskell
haskell-1
Haskell bindings for TensorFlow
Machine-learning-for-physics
A collection of papers, tools, blog posts and tweets about machine learning and physics
MyFlaskTutorial
A Flask Tutorial for people who don't know any web programming. Actually, it would be helpful to know static HTML, also Python.
openmm
OpenMM is a toolkit for molecular simulation using high performance GPU code.
openmm-plumed
OpenMM plugin to interface with PLUMED
openmoltools
An open set of tools for automating tasks relating to small molecules
pymummer
Python3 module for running MUMmer and reading the output
rewotes
REal WOrld TEstS: a set of quick take-home assignments used to test one's fit for a position with the company.
solar_radiation_database
analysis of data from the national solar radiation database
Spoon-Knife
This repo is for demonstration purposes only.
tensorflow
Computation using data flow graphs for scalable machine learning
YMeRo
Computational Microfluidics