Sarah (Sally) Guthrie's repositories
predicting-depression
Project to download neuroimaging data (fMRI, sMRI, and DTI), run the MRI data through NiPype, build regressors on these MRI data to predict depressive behaviors, and predict depressive behaviors from simply MRI data.
umb-and-tps-thesis
Analyze umbrella sampling and transition path sampling data. Used MDAnalysis. Will require modifications to MDAnalysis.analyze.hbonds.py code
arvados-tools
Small tools for working with arvados
beiwe-android
Beiwe is a smartphone-based digital phenotyping research platform. This is the Beiwe Android app code. The Beiwe2 app is also available on the Google Play store to use with open source builds of the Beiwe backend.
beiwe-ios
Beiwe is a smartphone-based digital phenotyping research platform. This is the Beiwe iOS app code. The Beiwe2 app is also available on the Apple app store to use with open source builds of the Beiwe backend.
find-ts-project
Find Transition States using measured Kinetic Isotope Effects
hgvm-lighting-graph
Graph representation of Lightning for the HGVM Pilot
matplotlib-venn
Area-weighted venn-diagrams for Python/matplotlib
onlinebrainintensive
Git Repo for my work in the Online Brain Intensive Class
osl-dynamics
Models for inferring dynamics in neuroimaging data.
server
A reference implementation of the APIs defined in the schemas repository.
sguthrie.gihub.io
Personal Site
tps-thesis
Analyze TPS. Possibly will find transition state ensemble and analyze reaction coordinates from it
vaccine-download
Pull information from MA government website and format