Shrikant Sharma's repositories
BrAPI
Repository for version control of the BrAPI specifications
Language:PythonMIT000
gitignore
A collection of useful .gitignore templates
CC0-1.0000
nf_reASMB
Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.
Language:NextflowGPL-3.0000
rnaseq_potato
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Language:NextflowMIT000
sgn
The code behind the Sol Genomics Network, Cassavabase and BreeDBase websites
Language:PLpgSQLMIT000
to-awk-or-not
This repositiory serves as an auxiliary material to an awk course/seminar page
Language:PythonGPL-3.0000
TransDecoder
TransDecoder source
Language:PerlNOASSERTION000
whatshap
Read-based phasing of genomic variants, also called haplotype assembly
Language:C++MIT000