serratus-bio / serratus

Archival Fork of the main Serratus repository.

Home Page:https://github.com/ababaian/serratus

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Serratus

Serratus is a collaborative Open Science project for ultra-rapid discovery of all viruses.

Serratus Mountain in Squamish, BC. Canada

Background

While there is an intense research effort to sequence and analyze SARS-CoV-2 isolates for tracking real-time virus evolution, our understanding of the virus's evolutionary origins is limited by incomplete genomic characterization of other members of the Coronaviridae (CoV) and related families.

We are re-analyzing all RNA-seq, meta-genomics, meta-transcriptomics and environmental sequencing data in the NCBI Short Read Archive to discover new coronaviruses. That is >5 million biological samples or >10 petabases of sequencing data.

Contribute to Serratus

The Serratus team is actively looking to collaborate with all scientists and developers.

Serratus Usage

Learn more on the Serratus Wiki

Data Release Policy

Our primary goal is to generate the viral data to accelerate the global research efforts in fighting emerging pathogens. To achieve this:

  • All software development is open-source and freely available (GPLv3)

  • All sequencing data generated, raw and processed, will be freely and immediatly available in the public domain in accordance with the Bermuda Principles set out by the Human Genome Project.


About

Archival Fork of the main Serratus repository.

https://github.com/ababaian/serratus

License:GNU General Public License v3.0


Languages

Language:Jupyter Notebook 81.3%Language:HTML 15.8%Language:Python 1.1%Language:Shell 1.0%Language:HCL 0.3%Language:Makefile 0.2%Language:Dockerfile 0.2%Language:Metal 0.1%