serenalotreck

DyHATR

DyHATR (ECML-PKDD 2020)

STHN

STHN: Simplifying Temporal Heterogeneous Network for Continuous-Time Link Prediction [CIKM 2023]

SAOM-with-random-effects

Code used in the paper Stochastic Actor Oriented Model with Random Effects

pandas-ai

Chat with your database (SQL, CSV, pandas, polars, mongodb, noSQL, etc). PandasAI makes data analysis conversational using LLMs (GPT 3.5 / 4, Anthropic, VertexAI) and RAG.

STHClusterAnalysis

BERTopic_academia

Topic modeling with BERTopic for PubMed abstracts on mental health in academia

SemRep

agatha

AGATHA: Automatic Graph-mining And Transformer based Hypothesis generation Approach

Citation-Network

Graph layout and visualization for million-node citation network

pykeen

🤖 A Python library for learning and evaluating knowledge graph embeddings

code4struct

Official repo for ACL 2023 paper Code4Struct: Code Generation for Few-Shot Structured Prediction from Natural Language.

KV-PLM

Source code for "A Deep-learning System Bridging Molecule Structure and Biomedical Text with Comprehension Comparable to Human Professionals"

end-to-end-ChemProt

End-to-End Models for Chemical–Protein Interaction Extraction: Better Tokenization and Span-Based Pipeline Strategies

biomedical

Tools for curating biomedical training data for large-scale language modeling

bioc

Data structures and code to read/write BioC XML and Json.

automatic_prompt_engineer

food_chem

knetminer

KnetMiner - webapp to search and visualize genome-scale knowledge graphs

stanza

Stanford NLP Python library for tokenization, sentence segmentation, NER, and parsing of many human languages

stanford-openie-python

Stanford Open Information Extraction made simple!

pygpu-workshop

dvc

🦉 ML Experiments and Data Management with Git

viewvc

ViewVC is a browser interface for CVS and Subversion version control repositories.

iterative-Random-Forest

Python implementation of iterative-random-forests

OmiEmbed

Multi-task deep learning framework for multi-omics data analysis

goatools

Python library to handle Gene Ontology (GO) terms

Documentation

Where the public documentation goes

eco-kg

amigo

This repo is the Planteome fork of geneontology.org AmiGO2 project. Issues in this repo should be reported only on AmiGO issues. Issues can be pushed upstream if relevant for GO.

node2vec