Missing pipeline parameters
chasemc opened this issue · comments
Not sure if this a me issue or tower issue.
When launching a pipeline of mine (https://github.com/socialgene/sgnf) a large number of parameters are missing, even when expanding "hidden". nf-core schema lint .
says there aren't any issue, and nf-core launch
Web based
shows all of the parameters
,--./,-.
___ __ __ __ ___ /,-._.--~\
|\ | |__ __ / ` / \ |__) |__ } {
| \| | \__, \__/ | \ |___ \`-._,-`-,
`._,._,'
nf-core/tools version 2.8 - https://nf-co.re
INFO [✓] Default parameters match schema validation
INFO [✓] Pipeline schema looks valid (found 88 params)
I've attached a picture showing tower and nf-core's web-based launcher for the version 0.0.5 of the pipeline
Tower
nf-core
This was due to the definition within the schema.json. I don't remember if the relevant values were something I did manually or automatically by nf-core tools.
The relevant sleuthing and fix by @robsyme is documented here https://github.com/socialgene/sgnf/pull/37/files#diff-4ec6c97fca07ea9b1ff300c0c4488d0f097ae32a78f0e0b01e00b9df0c346eb6
So this seems to have turn from a bug to feature request. It would be nice if an array/list type was supported as an input type