chasemc

electricShine

Create Standalone Installable Shiny Apps

IDBacApp

A MALDI Mass Spectrometry Bioinformatics Platform

demoApp

npPapers

Collection of Natural Products Papers (mostly for intro)

uw-scripts

Random helper scripts written while postdoc'ing at UW-Madison

advent-of-code

ai-resources

Personal repo to keep track of things

antismash

antiSMASH

autometa_test_data

Minimal data for testing the Autometa workflow

bash_scripts

Random bash scripts

biocatalysis-model

RXN for biochemical reactions

chasemc

chasemc.github.io

My Website

chtc_scripts

computational_biology

course material

dry-guide

The Guide to Computing in the Andersen Lab

job-grant-statements

Successful Job Applications and Grants

learngenomics.dev

A guided, intuitive introduction to genomics for software engineers. Curated by the community.

MetaPhlAn

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

paperpile-backup

presentations

ProteinCartography

a pipeline to build similarity maps of protein space

resume

Chase's CV/Resume

stamps2023

Materials for the STAMPS 2023 course at the MBL in Woods Hole, MA, USA

teachopencadd

TeachOpenCADD: a teaching platform for computer-aided drug design (CADD) using open source packages and data

temp3

tools

Python package with helper tools for the nf-core community.

ZamanianLabDocs

ProteinWorkshop

Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)