sephraim / bin4matics

A bin/ -like directory filled with CLI executables for bioinformatics and informatics usage

bin4matics

bin/. for. *matics

What is it?

• bin4matics is a collection of lightweight command line utilities that can be useful for [bio]informatics users

What is it not?

• bin4matics is not a replacement for VCF utilities like vcftools, bcftools, or vcflib

Utilities

• in1and2 - get lines from one file that are also in another file
• in1not2 - get lines from the 1st file that are not in the 2nd file
• in2not1 - get lines from the 2nd file that are not in the 1st file
• line - get a line from a file by its line number
• myqstat - list my current running Grid Engine jobs
• parts - split a file into N equal parts
• sortvariants - sort a variants file by chromosomal position
• tab2vcf - convert tab-delimited file to a VCF file

Help and usage examples

Use the -h option with any of the commands listed above to see usage examples and more information. For example, in1not2 -h or tab2vcf -h.

Author

Sean Ephraim