semir2's repositories
CellProfiler-2.1.1
Copy of older version of CellProfiler
chemprop
通过神经网络算法预测候选药物Message Passing Neural Networks for Molecule Property Prediction
CodonTilingPrimers
Create NNN primers tiling codons of a gene for codon mutagenesis
create_cisTarget_databases
Create cisTarget databases
cuml
GPU加速cuML - RAPIDS Machine Learning Library
DLEPS
A Deep Learning based Efficacy Prediction System for drug discovery
Drugmonizome-ML
Drugmonizome-ML – predict drugs for COVID-19 with drugmonizome and machine learning
Enrich2
Tool for deep mutational scanning experiments.
epiScanpy
单细胞甲基化分析工具Episcanpy: Epigenomics Single Cell Analysis in Python
EvoEF
蛋白突变设计EvoEF: fast and accurate tool for ddG prediction
immcantation-1
AIRR method developed by Kleinstein Lab, Yale University, 2020
L1000FWD
药物与基因表达数据库Large-scale visualization of drug-induced transcriptomic signatures
miRDriver
A computational tool to infer copy number derived miRNA-gene networks in cancer.
misty
Multiview Intercellular SpaTial modeling framework
peanut_pscdr3
Repository for the publication "Identification of antigen-specific TCR sequences based on biological and statistical enrichment in unselected subjects"
SARS-CoV-2-RBD_DMS
Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike
scGEAToolbox
MATLAB单细胞分析流程scGEAToolbox: Matlab toolbox for single-cell gene expression analyses
scirpy
A scanpy extension to analyse single-cell TCR and BCR data.
SingleCell-Workshop-2021
Module 4 for HKU Single-cell Workshop
SONAR
抗体分析Software for Ontogenic aNalysis of Antibody Repertoires
SPOTlight
空间转录组与单细胞转录组整合-每个splots的细胞类型比例Spatial Transcriptomics Capture Location Deconvolution
ST-mLiver
小鼠肝脏空间转录组Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the liver
sttkit
空间转录组Pipeline for SpatialTranscriptomics and 10X Visium data
Tumor-Immune-Cell-Atlas
15种癌症单细胞免疫图谱Code repository for the Tumor Immune Cell Atlas (TICA) project
visium_heart
Spatial transcriptomics of heart tissue
vsn-pipelines
A repository of pipelines for single-cell data in Nextflow DSL2