semir2's repositories
2016_bray_natprot
Supporting data files, documentation, and updated tips for the Cell Painting protocol
2021_Haghighi_submitted
High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
AbLang
AbLang: A language model for antibodies
Absolut
Unconstrained lattice antibody-antigen bindings generator
AccuraCode
AccuraCode® analysis pipeline
ActivePathways
多组学代谢通路富集Integrative pathway enrichment analysis of multivariate omics data
annotated_deep_learning_paper_implementations
很多深度学习论文复现相关🧑🏫 60 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠
ARMT
TCGA自动分析工具
autogluon
AutoGluon: AutoML for Text, Image, and Tabular Data
BaiduPCS-Go_new20231031
iikira/BaiduPCS-Go原版基础上集成了分享链接/秒传链接转存功能
bnt162b2
Markdown version of Reverse Engineering the source code of the BioNTech/Pfizer SARS-CoV-2 Vaccine
Census
Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation
CITE-seq-Count
A tool that allows to get UMI counts from a single cell protein assay
COSGR
Accurate and fast cell marker gene identification with COSG
cTRAP
Identification of candidate causal perturbations from differential gene expression data
DeepAb
Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
deepcell-tf
Deep Learning Library for Single Cell Analysis
DPKS
Data Processing Kitchen Sink for proteomics data
EC_YG638_Circos
script for Circos plot
escape
Easy single cell analysis platform for enrichment
GSEApy
Gene Set Enrichment Analysis in Python
ldsc
LD Score Regression (LDSC)
manuscript-rep-phad
Scripts to process 10X BCR data and create an AIRR input file (to upload into RepSeq platform)
MEM-examples
Marker Enrichment Modeling (MEM)
Platypus
R package for the analysis of single-cell immune repertoires
thermonucleotideBLAST
Searching DNA/RNA sequence databases with PCR and/or probe queries
unilm
Large-scale Self-supervised Pre-training Across Tasks, Languages, and Modalities