Sebastian Mate's repositories
AllenSPARQL
RDF- and SPARQL based temporal phenotyping engine
i2b2Wizard
i2b2 Wizard, the tool for installing and configuring i2b2 servers!
Docker-Mainzelliste
Dockerized Mainzelliste (Master Patient Index / Record Linkage)
OntoImportSuite
The "OntoImportSuite" is a set of proof-of-concept tools to extract and process heterogeneous data from clinical system, like the electronic medical record. This data can be mapped and transformed to match a set of common data elements, which will then be exported into a target system (i2b2) for research purposes. The system uses OWL ontologies to store information about the source and target systems and the mapping and transformation knowledge. The OWL ontologies are then translated into SQL scripts to perform the data integration on the database level.
ADOPT-BBMRI-ERIC-ETL-Tools
The Samply.MDR-based ETL tools from ADOPT BBMRI-ERIC
AllenGUI-Web
AllenGUI JavaScript Version
MagicQuartz-TechDemo
Turntable speedbox implementation for the MagicQuartz firmware
Docker-i2b2
Dockerized i2b2 1.7, based on the i2b2 Wizard
Docker-MDR
Docker files for the Mainz' Metadata Repository
Docker-OSSE
Dockerized OSSE (Open Source Registry System for Rare Diseases in the EU)
LittleJimmy
Small crowbar circuit for protection against overvoltage