Sebastian Daberdaku's repositories
AntibodyInterfacePrediction
software used in paper "Antibody interface prediction with 3D Zernike descriptors and SVM"
PPIprediction
software used in the paper "Exploring the potential of 3D Zernike descriptors and SVM for protein–protein interface prediction"
spark-with-glue-builder
Docker image that builds a patched Apache Spark with AWS Glue support as metastore
spark-glue-python
Apache Spark with AWS Glue metastore and Python docker image
apache-airflow-providers-pysparkonk8s
Python package for the pysparkonk8s Apache Airflow provider.
aws-glue-data-catalog-client-for-apache-hive-metastore
The AWS Glue Data Catalog is a fully managed, Apache Hive Metastore compatible, metadata repository.
base-aws-tf-infrastructure
Base Terraform project used to bootstrap a remote Terraform state on AWS
terraform-modules
Custom Terraform modules repository
VoxMeshSurfOpenMP
Source code for the paper: Daberdaku, S. Accelerating the computation of triangulated molecular surfaces with OpenMP. J Supercomput 75, 3426–3470 (2019). https://doi.org/10.1007/s11227-019-02803-y
specter-data-engineering-challenge
The Specter 👻 Data Engineering Challenge!
testing-airflow-with-localstack
Testing Airflow DAGs with LocalStack
variants_of_pathway_genes
This is a collection of scripts used to identify and download all known mutations in the dbSNP, ClinVar and OMIM databases affecting genes/proteins in the human insulin signaling and tryptophan metabolism pathways.
airdna-data-engineer-takehome-06-2024
AirDNA Data Engineer Python take home assignment
sebastiandaberdaku
My personal repository.
spark
Apache Spark - A unified analytics engine for large-scale data processing