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Alva Genomics

alva-genomics.com

Sebastian's starred repositories

GWalkR

Turn your data frame into a tableau style drag and drop UI interface to build visualization in R.

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liana

LIANA: a LIgand-receptor ANalysis frAmework

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fzf-lua

Improved fzf.vim written in lua

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azimuth

A Shiny web app for mapping datasets using Seurat v4

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sctransform

R package for modeling single cell UMI expression data using regularized negative binomial regression

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colino

Recipes Steps for Supervised Filter-Based Feature Selection

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cmp-r

Completion source for nvim-cmp using R.nvim as backend.

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debugadapter

Debug Adapter Protocol implementation for R

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umap

Uniform Manifold Approximation and Projection - R package

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tidypivot

Declarative group-wise count and compute, describing your target table

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janitor

simple tools for data cleaning in R

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ggforce

Accelerating ggplot2

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markdown-preview.nvim

markdown preview plugin for (neo)vim

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CuratedAtlasQueryR

Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.

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Bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

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snakemake-bisulfite

Pipeline for BS-Seq data based on snakemake

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R.nvim

Neovim plugin to edit R files

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OlinkRPackage

Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.

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DataExplorer

Automate Data Exploration and Treatment

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ggplotify

ggplot everything

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ggfortify

Define fortify and autoplot functions to allow ggplot2 to handle some popular R packages.

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tune

Tools for tidy parameter tuning

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SMAI

Alignability testing and integration of single-cell data

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parallelly

R package: parallelly - Enhancing the 'parallel' Package

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ppsr

R implementation of Predictive Power Score

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diffview.nvim

Single tabpage interface for easily cycling through diffs for all modified files for any git rev.

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Giotto

Spatial omics analysis toolbox

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extrafont

Tools for using fonts in R graphics

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trendsceek

Identify genes with spatial expression trends in single-cell gene expression data

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parsnip

A tidy unified interface to models

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