Sean LAIDLAW's repositories
Metallaxis
A Python GUI VCF viewer for SNP, indels, and TE.
better-bjobs
curses based wrapper script for LSF BJOBS command to improve on design and increase usefulness
Omnifocus-Habitica-Link
Scripts to allow a transfer of tasks from Omnifocus to Habitica.
Anki-QuickAdd
A graphical pop-up that allows rapid adding of notes to Anki from anywhere without having to alt-tab away from what youre doing.
EBI-Introduction-to-Github
Course material for the EMBL-EBI Introduction to Bioinformatics course
BorrowBox-Scraper
Python script to hands-free download all audiobooks on loan from library BorrowBox account.
EBI-Bioinformatics-course-Scaling_things_up
Scripts from the "Scaling things up" talk I gave at the EBI NGS Bioinformatics course in Sept 2019 and Feb 2021.
ZoomSlideCapture
Javascript userscript for capturing screen share from Zoom meeting connected through web browser.
iRODS-Downloader
Wrapper program for hassle-free downloading and realigning of sequencing data from iRODS on a cluster
BetterCoin
Web developpment class project to emulate what a classfied ads website would look like
fancyBar
Ubersicht bar for use with chunkwm
farm-tools
A collection of scripts for use on Sanger HPC to manage downloading, relaligning, and pre-processing
FFHQFaceAlignment
Fork of chi0tzp's Face alignment tool for transforming face images into FFHQ-style
GenomeCampus-Bus-Reserver
Scripts to automate the booking of Campus Bus for the Wellcome Genome Campus
hugo-theme-stack
Card-style Hugo theme designed for bloggers
land-use-tensorflow-project
A tensorflow project to analyse land use in the Dordogne region over time.
qmk_ergodox_layout
My custom layout for flashing onto the QMK based Ergodox keyboard. The base layout was Canadian Multilingual.
simple-bar
A yabai status bar widget for Übersicht
SmallRNA-GCT
Analysis code used for the Laidlaw et al Andrology paper: "Small non-coding RNA sequencing reveals global dysregulation of piwi-interacting RNA (piRNA) expression in gonadal malignant germ cell tumours." https://doi.org/10.1111/andr.13312
sorin-zsh-theme
Modification of the Sorin theme from Prezto library
whisperX-farm-wrapper
Python script for running audio transcription on audio files in google drive, and uploading results to a Notion database