seananderson / metafolio

Simulate metapopulations for portfolio optimization

seananderson/metafolio Issues

Consider showing how this is different from "just numerical stability"
Closed 10 years ago
Fig 4: Switch "stable" legend and define efficient frontier
Closed 10 years ago
Clean up and document plots_cons_plans.R file
Closed 10 years ago
Clean up and document remaining functions...
Closed 10 years ago1
Add discussion paragraph on what promotes response diversity
Closed 10 years ago1
Consider rule for when we refer to "salmon" vs. "salmonids"
Closed 10 years ago
Discuss role of low abundance in reducing response diversity
Closed 10 years ago1
Figure out the X times lower variance in Fig 5b
Closed 10 years ago
Re-run figs making sure thermal_integration a's are everywhere
Closed 10 years ago1
Add to meta_sim docs
Closed 10 years ago
Check each main function for description, returns, and examples
Closed 10 years ago
Replace most/many salmon references in general part of discussion
Closed 10 years ago
Switch from "environment" to "thermal" and hot cold
Closed 10 years ago
Add climate change to first paragraph
Closed 10 years ago
Add bias correction to SR residuals (in methods section)
Closed 10 years ago1
Revise opening and closing paragraph
Closed 10 years ago
Touch up Fig 3 (example ts plot)
Closed 11 years ago1
Touch up Fig 2 (response curves)
Closed 11 years ago1
bias correct exponentiated residuals
Closed 11 years ago1
Make all .r files lower case r's
Closed 11 years ago
Add SOM fig references to paper
Closed 11 years ago
Strengthen climate-salmon paragraph
Closed 11 years ago1
Consider creating the main figures (mv + ts + extinction?) across high and low parameter values
Closed 11 years ago
Add correlation matrix figure back to supplement
Closed 11 years ago
Send Jon paper that describes general upper limit to salmon thermal tolerance in Pacific NW
Closed 11 years ago
Look over assumptions made about fisheries assessment and make sure they're reasonable
Closed 11 years ago1
Create outline of topic sentences of paper
Closed 11 years ago1
Try figure of quasi-extinction described by Trevor
Closed 11 years ago
Develop new discussion mindmap
Closed 11 years ago
Add arrow to lower right - higher extinction risk
Closed 11 years ago
Add subheadings in lower panels of last 2 figures
Closed 11 years ago
Explain that we're picking one kind of response
Closed 11 years ago
Add recording of quasi-extinction
Closed 11 years ago4
Try making all thermal curves equal heights
Closed 11 years ago1
Try adjusting thermal-tolerance curves as described by Trevor
Closed 11 years ago1
Create new plot with different # subpopulations but random response diversity
Closed 11 years ago4
Create new conservation scenarios time series plot
Closed 11 years ago1
Revise the simulation time series plot to make it more presentable
Closed 11 years ago1
Outline the main figures
Closed 11 years ago1
Create clean manuscript .Rmd file leaving the current exploratory draft as is
Closed 11 years ago1
Write code to use new run_cons_plans function with the simpler conservation scenarios
Closed 11 years ago
Adjust when long-term environmental trends start
Closed 11 years ago1
write function that makes it easy to add an operationalized conservation plan and plot it in risk-reward space
Closed 11 years ago1
develop conservation option rules of thumb to test
Closed 11 years ago2
add black swan env. ts
Closed 11 years ago1
add some default additional plots in eff. frontier space --- each on own and equal weights
Closed 11 years ago1
make plot of increasing monte-carlo n
Closed 11 years ago1
is there a way we can scale multiple EFs to make them comparable?
Closed 11 years ago1
add either management with fixed `a` or ricker fitting
Closed 11 years ago1
add narrower taller and wider shorter env. tolerance curves
Closed 11 years ago1