scwatts

fastspar

Rapid and scalable correlation estimation for compositional data

hicap

in silico typing of the H. influenzae cap locus

hla_realignment

multiqc_umccr

ktyper

Web application for MALDI-TOF spectrum classification

amazon-ebs-autoscale

bioconda-recipes

Conda recipes for the bioconda channel.

bolt

cloudos-exploration

gene_panels

golang_prog_fusionfs_debug

gpgr_sash

hmftools

Various algorithms for analysing genomics data

hmftools_pipeline

ichorcna-nf

ichorcna-pipeline-example

multi-package-containers

Testing building mulled containers for multi-requirement tools.

MultiQC

nf-core-modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nf-core-test-datasets

Test data to be used for automated testing with the nf-core pipelines

nf-core-tools

Python package with helper tools for the nf-core community.

nf-core-website

Code and files for the main nf-core website.

nf-schema

Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines

oncoanalyser-cloudos

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

sash

star-align-nf

t1k_pipeline

umccr_reference_data