Sébastien Cossin's repositories
iamsystem_python
Fast dictionary-based approach for semantic annotation / entity linking
IMthesaurusANSM
extraire le PDF du thesaurus des interactions médicamenteuses de l'ANSM
IAMsystemFastContext
Combines IAMsystem and FastContext
ExtractThesaurusANSM
Extraire le thesaurus des interactions de l'ANSM
record_linkage_insee
Linkage of Hospital Records and Death Certificates by a Search Engine and Machine Learning
RIAMsystem
Rpackage a semantic annotation tool to detect concepts in textual content
abbreviations
Semi-Automatic Extraction of Abbreviations and their Senses from Electronic Health Records
CandidateTerm
Extraction automatique de groupes nominaux dans un document
CatalogueExport
Exports the data from the OMOP-CDM that is necessary for the EHDEN Database Catalogue
CdmInspection
R Package to support quality control inspection of an OMOP-CDM instance
DatabaseConnector
An R package for connecting to databases using JDBC.
DataQualityDashboard
A tool to help improve data quality standards in observational data science.
FeatureExtraction
An R package for generating features (covariates) for a cohort using data in the Common Data Model.
mailR
A utility to send emails from the R programming environment
matchID-project.github.io
matchID project Website
medkit
Mirror of https://gitlab.inria.fr/heka/medkit
ontodia-blazegraph-docker
A docker-compose to deploy blazegraph and ontodia
PioneerWatchfulWaiting
This study is part of the joint PIONEER - EHDEN - OHDSI studyathon in March 2021, and aims to advance understanding of clinical management and outcomes of watchful waiting in prostate cancer.
python-tutorial
A Python 3 programming tutorial for beginners.
ROhdsiWebApi
An R package for interfacing with a WebAPI instance
TheBookOfOhdsi
The Book of OHDSI repository