Solenne Correard's repositories
1KGP_dimred
Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.
bioconda-recipes
Conda recipes for the bioconda channel.
Canadian_Biogenome_Project
This repo contains the pipeline used by the Canadian Biogenome Project (http://earthbiogenome.ca) to generate assemblies
chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
curationpretext
A Nextflow DSL2 pipeline for pretext generation in curation
gatk
Official code repository for GATK versions 4 and up
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
nextflow-website
Nextflow public web site
Rapid-curation-2.0
TPF-less rapid curation of genomes
scorreard
Solenne's GitHub landing page
speedseq
A flexible framework for rapid genome analysis and interpretation
test-datasets
Test data to be used for automated testing with the nf-core pipelines
Variant_catalogue_pipeline
Variant catalogue pipeline test