n_cells and n_valid_cells
tischi opened this issue · comments
@imagirom @constantinpape
I usually have two columns n_cells and n_valid_cells (i.e. the ones that passed cell-based QC). The first contains all cells and is useful for image based QC (too many cells, i.e. overgrown). The latter is useful to see how many cells were actually entering the analysis. What do you think?
We have this already, but I think it's just not copied into the default tables.
I will fix it later once you have pushed the new viewer version, so that I can double check this on my own.
@tischi We will have n_cells and n_outlier_cells in the default tables soon. With n_cells_total = n_cells + n_outlier_cells.
Implemented in #107