Schuyler Smith's repositories
phylosmith
functions for analyzing phyloseq data
soil_column_ARG_disperal
Workflow for analysis in "Investigating the dispersal of antibiotic resistance associated genes from manure application to soil and drainage waters in simulated agricultural farmland systems"
2020-03-05-gwu
Data Carpentry Genomics Shortcourse for George Washington University 03-2020
2020-08-03-merck-online
Data Carpentry workshop for Merck & Co., Inc.
2021-11-15-uidaho-online
Software Carpentry (Shell, Git, R for Reproducible Scientific Analysis) workshop on November 15-18, 2021
aws-cli-user-guide
The open source version of the AWS CLI User Guide
genome_tools
various scripts for functions with genomic data
hpcc_R_setup
scripts to setup on the msu hpcc for shared lab group libraries
phylosmith_sans_igraph
phylosmith, but without igraph!
shiny_practice
practice examples while I'm learning Shiny
simple.dada
R package to simplify the DADA2 pipeline.
ssBLASTtools
command line functions for working with BLAST inputs/outputs
wrangling-genomics
Data Wrangling and Processing for Genomics