sccn / NEMAR-pipeline

NEMAR-pipeline

Code for NEMAR pipeline to generate visualization and data quality report. Refactored https://github.com/sccn/app-test-NEMAR

Using your own function

• Make sure you have an Expanse
• Clone the repository

There are 2 types of pipelines

• Pipelines that process single EEG datasets
• Pipelines that process an entire BIDS repo

process_all_custom_pipelines

• Take a BIDS dataset
• Take a function name to process the data

Allow to use the processed directory instead of the raw data folder

3 modes

• Process single EEG dataset
• Process all EEG datasets of a subject
• Process a STUDY
• Process the BIDS folder

The function should write a JSON or SVG file into the same folder as the EEG file or the same folder as the derivative BIDS repo

• At the same time

options - options to the function

Parameters

Inclusion to the NEMAR website

• Send the name of the file to Dung
• If a plot, send the title
  • associated titled
  • file name
• If a JSON file, for each entry send. No array allowed.
  • title
  • field
  • description