Jiacheng Dai's repositories
Agonal-factors-project
codes for my project
atac_seq
atac_seq pipeline
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
chiasm
Detection and Quantification of circRNAs in Transcriptome Data, case Study on Honeybees
CIRCexplorer2
circular RNA analysis toolset
ciri-as
Docker to run CIRI-AS for splicing quantification of circular RNA
CLEAR
direct comparison of circular and linear RNA expression
DRAMS
A tool to Detect and Re-Align Mixed-up Samples based on multi-omics data
dynbenchmark
Comparison of methods for trajectory inference on single-cell data 🥇
English-level-up-tips-for-Chinese
可能是让你受益匪浅的英语进阶指南
ESCCatlas
Multi-region Single-cell atlas of Esophageal Squamous Cell Carcinoma
FAtools
R package for factor analysis visualization
GO_MWU
Rank-based Gene Ontology analysis of gene expression data
holoflow
Bioinformatics pipeline for hologenomics data generation and analysis
liger
R package for integrating and analyzing multiple single-cell datasets
MapSplice
Bioinformatics software release from Jinze Liu's Bioinformatics lab @ UKy
population-compare-pipeline
Analysis pipelines for QTL discovery and GWAS signals interpretation
scater
Clone of the Bioconductor repository for the scater package, see https://bioconductor.org/packages/devel/bioc/html/scater.html for the official development version.
scRNA-seq-analysis
use SingleCellExperiment and Scater packages to analysis single cell RNA sequencing data
tSNEplots
An R script for automatically creating coloured tSNE plots
unknown-factors-analysis
analysis tried to find undefined factors