Scathacheng

circular-RNA-learning

Agonal-factors-project

codes for my project

ASD-Integration-Subtypes-Manuscript

atac_seq

atac_seq pipeline

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

chiasm

Detection and Quantification of circRNAs in Transcriptome Data, case Study on Honeybees

CIRCexplorer2

circular RNA analysis toolset

ciri-as

Docker to run CIRI-AS for splicing quantification of circular RNA

CLEAR

direct comparison of circular and linear RNA expression

csuWGCNA

DCC

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.

differential-expression-analysis

DRAMS

A tool to Detect and Re-Align Mixed-up Samples based on multi-omics data

dynbenchmark

Comparison of methods for trajectory inference on single-cell data 🥇

ECatlas

English-level-up-tips-for-Chinese

可能是让你受益匪浅的英语进阶指南

ESCCatlas

Multi-region Single-cell atlas of Esophageal Squamous Cell Carcinoma

FAtools

R package for factor analysis visualization

GO_MWU

Rank-based Gene Ontology analysis of gene expression data

holoflow

Bioinformatics pipeline for hologenomics data generation and analysis

liger

R package for integrating and analyzing multiple single-cell datasets

MapSplice

Bioinformatics software release from Jinze Liu's Bioinformatics lab @ UKy

population-compare-pipeline

Analysis pipelines for QTL discovery and GWAS signals interpretation

scater

Clone of the Bioconductor repository for the scater package, see https://bioconductor.org/packages/devel/bioc/html/scater.html for the official development version.

scRNA-seq-analysis

use SingleCellExperiment and Scater packages to analysis single cell RNA sequencing data

Shared-molecular-neuropathology-across-major-psychiatric-disorders-parallels-polygenic-overlap

Single-cell-analysis

ssstudy

tSNEplots

An R script for automatically creating coloured tSNE plots

unknown-factors-analysis

analysis tried to find undefined factors