Sander Canisius's repositories
discover-notebooks
Jupyter notebooks for reproducing the analyses in the paper 'A novel independence test for somatic alterations in cancer shows that biology drives mutual exclusivity but chance explains most co-occurrence'
pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
Language:CMIT000
RUBIC
RUBIC detects recurrent copy number aberrations.
Language:RApache-2.0000