scalable minds's repositories
webknossos
Visualize, share and annotate your large 3D images online
webknossos-libs
Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.
invoice-compiler
Generate invoices from YAML files using puppeteer.
webknossos-wrap
Efficient 3D volume storage format for webKnossos and analyses
dockerfiles
Docker images used within scalableminds :whale:
stroke-lesion-segmentation
Supplementary materials for the publication "Deep learning-based automated lesion segmentation on mouse stroke magnetic resonance images"
zarr-java2
Java implementation of the Zarr Specification
zarr-python
An implementation of chunked, compressed, N-dimensional arrays for Python.
boltons
🔩 Like builtins, but boltons. 250+ constructs, recipes, and snippets which extend (and rely on nothing but) the Python standard library. Nothing like Michael Bolton.
inducoapi
A simple python module to generate OpenAPI Description Documents by supplying request/response bodies.
n5-http
N5 library implementation using HTTP(S) backend.
n5-zarr
Zarr filesystem backend for N5
prop-types
Runtime type checking for React props and similar objects
react-remarkable
A React component for rendering Markdown with remarkable - forked to keep dependencies updated
remarkable
Markdown parser, done right. Commonmark support, extensions, syntax plugins, high speed - all in one. Gulp and metalsmith plugins available. Used by Facebook, Docusaurus and many others! Use https://github.com/breakdance/breakdance for HTML-to-markdown conversion. Use https://github.com/jonschlinkert/markdown-toc to generate a table of contents.
siibra-matlab
Matlab interface to the siibra toolsuite
trigger
Abstract React Trigger
vizarr
A minimal, purely client-side program for viewing Zarr-based images with Viv & ImJoy.
webknossos-connect
Connect webKnossos with existing datasets (BossDB, Neuroglancer Precomputed)
zarr-specs
Zarr core protocol for storage and retrieval of N-dimensional typed arrays
zarr.js
Javascript implementation of Zarr
zarr.webknossos.org
Gallery of OME-Zarr datasets from WEBKNOSSOS