sbmlteam / jsbml

JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (the Systems Biology Markup Language) and data streams. It is an alternative to the mixed Java/native code-based interface provided in libSBML.

Home Page:https://sbml.org/software/jsbml/

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Loss of annotation: vCard:Middle

mephenor opened this issue · comments

It seems that some annotations are lost when reading and re-writing an SBML file.
The one I noticed is "vCard:Middle" that is sometimes used in the 'dc:creator' section of the annotation block of the 'model' element.
If that helps, the file was a L2V4 considered valid by the online SBML validator.

Reported by: perkeo

  • milestone: --> jsbml 1.0
  • assigned_to: nobody --> niko-rodrigue
  • status: open --> open-accepted

Original comment by: niko-rodrigue

This particular element is not allowed by the SBML specifications and won't be properly handled in jsbml-0.8.
We are trying to build a system for jsbml-1.0 that would allow to store any additional elements or attributes that were added inside the official RDF annotation block.

Original comment by: niko-rodrigue

It should be fixed in the latest trunk and the soon to be released jsbml-1.0-beta1

Original comment by: niko-rodrigue

  • status: open-accepted --> closed-fixed

Original comment by: niko-rodrigue