sbbauer

Targeted-Survival

Targeted estimation of heterogeneous treatment effect in observational survival analysis

aurumpipeline

awesome-ehr-deeplearning

Curated list of awesome papers for electronic health records(EHR) mining, machine learning, and deep learning.

CDS

Causal Inference using Deep Bayesian Dynamic Survival Models

CleanCPRD

Code used to setup the CPRD data prior to the analyses conducted in the DementiaDrugsCPRD and repurposing-antihypertensives-dementia repositories.

CMD_multimorbidity

Common mental disorders and additional long-term conditions

CPRD-GOLD-migrant-phenotype-validation

Code, codelists and ONS datasets used for the CPRD GOLD migrant phenotype validation study

CPRD-GOLD-migrant-primary-care-consultations

CPRD-GOLD-migrant-sexual-and-reproductive-health-and-rights

Phenotypes and code used for analyses of sexual and reproductive health and rights (SRHR) outcomes in CPRD GOLD comparing migrants to non-migrants

CPRD-LRA

Code for an analysis of the association of lipid regulating agents (e.g. statins) with incidence of dementia outcomes

CPRD_multimorbidity_codelists

CPRD_multimorbidity_trends

data-quality-checker

Check the basic quality of any dataset

data-wrangling-functions

Functions used for wrangling education research data

DeepIPW

Code for paper "A deep learning framework for drug repurposing via emulating clinical trials on real world patient data" (Accepted to Nature Machine Intelligence).

drugprepr

An algorithm for the transparent and efficient preparation of CPRD drug data into information on individuals’ drug use over time

Electronic-Health-Records-Analysis-for-Sepsis

MIMIC-III(Medical Information Mart for Intensive Care III) dataset and PIC(Paediatric Intensive Care) dataset Analysis for Sepsis Management.

FIDDLE

FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algorithms. https://doi.org/10.1093/jamia/ocaa139

Frustration-One-Year-With-R

An extremely long review of R.

MirtazapineSafetyAnalysis

Stata do-files for preparation and analysis of CPRD data for a project about the safety of mirtazapine

R_guide

R instructions for our research projects

RandomisedTrialsEmulation

RDrugTrajectory

An R package designed for CPRD prescription electronic healthcare records.

stacs-thesis

A LaTex class for writing theses and dissertations. Includes a skeletal thesis customised to University of St Andrews.

steroids-trial-emulation

Tutorial for a target trial emulation with a time-varying exposure, time-dependent confounding, and a time-to-event outcome. Estimation is Sequentially Doubly Robust (SDR). Application is corticosteroids effect on mortality.

survITE

SurvITE: Learning Heterogeneous Treatment Effects from Time-to-Event Data

synthetic_trial_amd

trial_emulation_HIC

Code for trial emulation using multiple imputation

TrialPathfinder

ustandown

Rmarkdown template for USTAN theses