Shriram Bhosle's repositories
bio-playground
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
cgp_seq_input_val
Sequence data and manifest validation code.
copynumber
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/copynumber.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=copynumber.
CRISPRcleanR
Unsupervised correction of gene independent cell responses to CRISPR-cas9
demo-terraform-101
Before and after demo code for the Terraform Introduction training course
docker-images
Repository of Docker images created by Continuum Analytics
ncov2019-artic-nf
A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019 - adapted to run at the Wellcome Sanger Institute
nomad
Nomad is a flexible, enterprise-grade cluster scheduler designed to easily integrate into existing workflows. Nomad can run a diverse workload of micro-service, batch, containerized and non-containerized applications. Nomad is easy to operate and scale and integrates seamlessly with Consul and Vault.
packer
Packer is a tool for creating identical machine images for multiple platforms from a single source configuration.
peakRescue-1
Method to rescue ambiguous reads in RNA-Seq experiments
s3cmd-plugin
Dockstore S3cmd file provisioning plugin
user_guide
The CWL v1.0 user guide
vagrant
Vagrant is a tool for building and distributing development environments.
Voronoi_procedure
Quantification of protein surfaces, volumes and atom-atom contacts using a constrained Voronoi procedure.