satyanarayan-rao

BokehwithApache

protein_binding_at_enhancers

bashT

Bash Tutorial

Trj2Shape

DNA shape analyses of MD trajectories

BioinfoR

BioPython

Cheat-sheets

deep_learning_theano

demo_hub

Checking UCSC REST api

Dissertation

DNAshapedTFBS

Training and using TFFM/PSSM/4-bits + DNA shape classifiers

dragonn

A toolkit to learn how to model and interpret regulatory sequence data using deep learning.

dSMF_analysis_at_dm_enhancer

fast_bed_sort

Sorting large bed files by chromosome splitting

FeatureREDUCE

Repo for running FeatureREDUCE in a virtual environment

github-cheat-sheet

A list of cool features of Git and GitHub.

hacks

Hail-Python

Awesome things in Python

methyl-DNAshapeR

R package for high-throughput DNA shape predictions and feature encoding

ML-USC

Course taken at USC

public_data_processing_for_deeprec

python-guide

Python best practices guidebook, written for Humans.

rPythonTrial

satyanarayan-rao.github.io

Seq2Logo

snakemake_tutorial

Basic and Advanced Level Snakemake Workflows

StackOverflow

https://blog.pother.ca/StackOverflow/ Code and Examples to accompany my answers and questions on the StackOverflow website.

star_protocol_enhancer_cooperativity

tf_nucleosome_dynamics

VisualizeConvNet