satta

AEGeAn

Integrated toolkit for analysis and evaluation of annotated genomes

annot-web

Web interface for annotation pipeline

Artemis

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

companion

Eukaryotic genome annotation pipeline implemented in Nextflow

companion-publication

Accompanying information for the Companion publication

debconf-choices-playground

ethflux

InfluxDB data gatherer for ethtool-style network interface information

ethtool

A simple ethtool "like" library for GO

gff3toembl

Convert a GFF3 file to a format acceptable for submission to EMBL

gitlab-ansible-jessie

Docker image for Jessie Ansible testruns

iocee

A small tool to automatically extract possible IOCs from streams of text data. Useful in conjunction with our bloom tool to identify IOCs.

ttlcache

An in-memory string-interface{} map with various expiration options for golang

eupathtables

Python interface for reading and converting EuPathDB flat file dumps

Fastaq

Python3 scripts to manipulate FASTA and FASTQ files

gitlab-ansible-stretch

htslib

C library for high-throughput sequencing data formats

hyperscan

High-performance regular expression matching library

khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

openssl

TLS/SSL and crypto library

paste-scrape

Pastebin scraper written in go

percona-server-mongodb

Percona Server for MongoDB

rgfa

Ruby library for handling GFA files

Roary

Rapid large-scale prokaryote pan genome analysis

softlockup_test

Linux kernel module to introduce soft lock-up/panic for testing

STAR

RNA-seq aligner

surevego

suricata eve.json parser in Go

suricata-update

The tool for updating your Suricata rules.

tie2misp

Import DCSO TIE IOCs as MISP events

whatsmyname

Map machine IDs to noun pairs

yubikey-piv-manager-dpkg

Debian packaging for yubikey-piv-manager