satopan

pitagora-cwl

Common Workflow Language tools and workflows by Pitagora-Network

r-pkgs

Building R packages

data-science-at-the-command-line

Data Science at the Command Line

k8s-cluster-simulator

Kubernetes cluster simulator for evaluating schedulers.

picrust2

Code, unit tests, and tutorials for running PICRUSt2

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

phangorn

Phylogenetic analysis in R

python-machine-learning-book-2nd-edition

The "Python Machine Learning (2nd edition)" book code repository and info resource

microbiome-data

For anyone who wants to share and compare their microbiome data.

microbiome-tools

For tool creators to share their inventions that analyze, visualize, and make meaning of microbiome data.

self_taught

This repository contains the exercises for "The Self-Taught Programmer: The Definitive Guide to Programming Professionally."

omixer-rpm

A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.

dmbvs

Dirichlet-Multinomial Bayesian Variable Selection

pydata-book

Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

ScienceR

Wonderful R4 自然科学研究のためのR入門: 再現可能なレポート執筆実践 のサポートページです。

dtreeviz

A python library for decision tree visualization and model interpretation.

IBSMicrobiota

algorithms

This repository is for learning and understanding how algorithms work.

introduction_to_ml_with_python

Notebooks and code for the book "Introduction to Machine Learning with Python"

awesomebook

statistics-for-data-scientists

Code and data associated with the book "Statistics for Data Scientists: 50 Essential Concepts"

ISCPP

Introduction to Scientific Computing and Programming in Python

hypertools

A Python toolbox for gaining geometric insights into high-dimensional data

RStanBook

『StanとRでベイズ統計モデリング』のサポートページです.

Useful_R_09_sample