This repository is to share the Common Workflow Language definition files of tools and workflows, maintained by Pitagora Network, as known as Galaxy Community Japan.
- Get Data
- Data Formatting
- Read Alignment
- Variant Analysis
- Transcriptome Analysis
See documentation in each workflow directory for the instruction.
Each workflow listed above has a shell script to run the workflow for testing. See README in each workflow directory for how to exec the test run.
The test scripts bundled with the workflows will automatically download the corresponding reference data listed below.