Soufiane Mourragui's repositories
Balistic-project
I have designed this software for a project in my last year of Bachelor at Mines ParisTech. It is called the "Balistic Game" : two war-engines are confronting to one another and the first able to destroy the other wins. It has been designed in Java
bonito
A PyTorch Basecaller for Oxford Nanopore Reads
cellrank
CellRank for directed single-cell fate mapping
DNAscent
Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
Euler-Project
Some results on the Euler Project
Preparatory-Class-Projects
You will find there my personnal projects made during my two years of prepatory class. The first one simulates a Black-Jack game and answers the question : are counting cards systems worth it ? (the answer is yes). The second one is more physics oriented. It simulates graphically and analytically a chemical reaction of diffusion known as Belouzov-Zhabothinsky reaction. This model uses the works of the Oregonator project.
Research-project-diffusion-network
During my first year of master I have developed a software that enable to uncover a network given the knowledge of cascades. I adapted the work of other researchers for two cases : one single infection (cf. J.Leskovec's work) and plural infections.
scikit-learn
scikit-learn: machine learning in Python
ecosystem-packages
Registry for scverse ecosystem packages
paradoxical_activation_scrnaseq
Analysis pipeline for the scRNA-seq data presented in "Paradoxical activation of oncogenic signaling as a cancer treatment strategy"
PyDESeq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
remora
Methylation/modified base calling separated from basecalling.
scvi-tools
Deep probabilistic analysis of single-cell omics data
transferlearning
Resources and codes about transfer learning and domain adaptation--迁移学习