Sara Matias's repositories
Bpod_StateMachine_Firmware
Arduino firmware for Bpod State Machine (all hardware versions)
allenCCF
Tools to work with Allen Inst CCF data in matlab
Bpod_Gen2
Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
CaImAn-MATLAB
Complete Matlab pipeline for large scale calcium imaging data analysis
course-content
Summer course content for Neuromatch Academy
DeepLabCut
Markerless tracking of user-defined features with deep learning
dive-into-machine-learning
Dive into Machine Learning with Python Jupyter notebook and scikit-learn!
Docker4DeepLabCut
Dockercontainer to run DeepLabCut http://www.mousemotorlab.org/deeplabcut/
dopamine
Dopamine is a research framework for fast prototyping of reinforcement learning algorithms.
FastLZeroSpikeInference
Fast Exact Spike Inference Via L0 Optimization
iblapps
pyqt5 dependent applications for IBL sessions
jayhennig_value-rnn-td
train an RNN to estimate value in a POMDP using TD learning
Kilosort
Fast spike sorting with drift correction for up to a thousand channels
MathToolsforNeuroscience
Materials for Mathematical Tools for Neuroscience course at Harvard (Neurobio 212)
mouseVR
Harvey Lab miniaturized mouse VR rig for virtual navigation and decision-making tasks
phy
phy: interactive visualization and manual spike sorting of large-scale ephys data
Reinforcement-Learning-2nd-Edition-by-Sutton-Exercise-Solutions
Solutions of Reinforcement Learning, An Introduction
reinforcement-learning-an-introduction
Python Implementation of Reinforcement Learning: An Introduction
Reinforcement-learning-with-tensorflow
Simple Reinforcement learning tutorials
reinforcement_learning_an_introduction
Notes and exercise solutions for second edition of Sutton & Barto's book
SpikeGLX
HHMI Neural Recording System
ssm
Bayesian learning and inference for state space models
stats320
STATS320: Statistical Methods for Neural Data Analysis
Suite2P
Tools for processing 2P recordings
sutton-barto-notebooks
Jupyter Notebooks for Sutton & Barto's Reinforcement Learning: An Introduction
tensortools
A very simple and barebones tensor decomposition library for CP decomposition a.k.a. PARAFAC a.k.a. TCA