Sarah Kada's repositories
covid19-agestructureSEIR-wuhan-social-distancing
Age-structured SEIR model for COVID-19 outbreak in Wuhan, China
dengue-antigenic-dynamics
Investigating dengue virus antigenic evolution. Supplements work from:
dengue-catalytic-model
code to run dengue catalytic model from age-specific case notification data
dengue-thailand-2014-forecasts
Code and public data for "Challenges in real-time prediction of infectious disease: a case study of dengue in Thailand"
Dengue_expansion
Data and code to accompany "The impact of climate suitability, urbanisation, and connectivity on the expansion of dengue in 21st century Brazil."
dengue_foi
Example code to estimate force of infection from age-stratified incidence data, as described in "Opportunities for improved surveillance and control of infectious diseases from age-specific case data: insight from dengue".
dengue_t2m_severity_paper
Repository for codes and analysis on the impact of temperature associated with the Relative Risk for Dengue Hospitalization
EpiDynamics
An R package with Dynamic Models of infectious diseases
EpiNow
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
EpiNow2
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
Resources_and_Bookmarks
Personal bookmarks and cheat sheets
sarahkada
personal webpage
styles
Official repository for Citation Style Language (CSL) citation styles.
SuperinfectionCoevolution
Simulation code for the manuscript "Superinfection and the coevolution of parasite virulence and host recovery rate
Useful-functions
Functions I find useful (some stolen from bobFunctions by @bobverity)
wcov
Pattern of early human-to-human transmission of Wuhan 2019-nCoV
ZikaModel
Discrete time model of Zika transmission using odin