sarahhp / nucleolus_paper

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nucleolus_paper

dir structure: nucleolus_paper

  • 02featureCounts
    • featureCounts output files
  • 03limma
    • DGE and rpkm output files
  • R/
    • scripts.Rmd (script)
    • scripts.pdf (md script with embedded figures for easy viewing)
    • folders_for_figures
  • sample_info
    • metadata tables in csv format for loading into R

scripts and the files they produce:

  • ASC_TIMEcourse_limma_plusDay15_nucleolus_analysis_2023.Rmd
    • -> adipogenesis_rpkm_tmm.tab
    • -> adipogenesis_rpkm_tmm_means.tab
    • -> nucleolus_adipogenesis_DE.tab
  • native_late_adipoDE_2023.Rmd
    • -> day15_bulk.v.float.tab
  • ribosome_heatmaps_adipogenesis.Rmd
    • ribosome_heatmaps_adipogenesis\Figure3a_lower-1.pdf
    • ribosome_heatmaps_adipogenesis\Figure3a_upper-1.pdf
    • ribosome_heatmaps_adipogenesis\FigureS6a_lower-1.pdf
    • ribosome_heatmaps_adipogenesis\FigureS6a_upper-1.pdf

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License:GNU General Public License v3.0