fetchMyLineage is a script that fetch a complete lineage (Kingdom, Phylum, Class, Order, Family, Genus, Species). Save yourself headaches :D, you only need a genus and species name and the script will do the work.
- bash version >= 4.0
- Mac OSX
- (for linux user, replace "tail -r" for "tac" command in the script)
bash fetchMyLineage.bash [genus] [specie]
where [genus] and [specie] is a genus and specie name
Example:
bash fetchMyLineage.bash Escherichia Coli
Output:
Superkingdom: Bacteria
Phylum: Proteobacteria
Class: Gammaproteobacteria
Order: Enterobacterales
Family: Enterobacteriaceae
Genus: Escherichia
Specie: Coli
check for these tools to extract some useful information from your data:
-
multiGenomicContext: Check the genomic context of several genomes or sequence just providing the GBK files.
-
fetchMyLineage: Return the complete lineage of your organism just providing the genus and species names.
-
extractSeq: Extract and size defined sequence from and specific contig, from and specific genome.
-
plotMyGBK: Plot your GBK in a circular graph with COG categories.
-
pasteTaxID: fetch the taxonomic IDs to your fastas.
-
GGisy: Plot synteny of two sequence (you can use two genomes), and see the identity of the matched regions.
-
getS2: obtain the order parameter to each residue of your simulation.