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sannpeterson's repositories

Semantic-search-log-analysis-pipeline

Classify web visitor queries so you can chart, and respond to, trends in information seeking

Language:JavaScriptMIT1 10

TriFECTA

The goal of this project is use natural language processing to extract exclusion and inclusion criteria from free form text fields to match patients with clinical trials.

Language:ShellMIT1 10

Using-PubMed-MEDLINE-Metadata-to-Generate-Knowledge

Language:Jupyter NotebookMIT1 10

Experiment using Elsevier Labs' Annotation Query library to query annotations of PubMed articles. The code is in Scala and leverage SPARK processing. The annotations for the articles are extracted from PubTator and Stanford Core NLP.

Language:ScalaMIT010

BioSentVec

BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

Language:Jupyter NotebookNOASSERTION010

cairoshell

Cairo is a customizable, intuitive desktop environment for Windows.

Language:C#000

cosmos

Algorithms that run our universe | Your personal library of every algorithm and data structure code that you will ever encounter | Ask us anything at our forum

Language:Jupyter NotebookGPL-3.0010

CTEligible

Use machine learning to find patterns of similar eligibility protocol criteria for clinical trials

Language:PowerShellMIT010

electron-dockable

dockable panel for electron (work in progress...)

Language:JavaScriptMIT010

FastContext

FastContext is an optimized Java implementation of ConText algorithm (https://www.ncbi.nlm.nih.gov/pubmed/23920642).

Language:JavaApache-2.0010

hello-world

020

library

:blue_book: A curated library of commands for the Backtick Chrome Extension.

Language:JavaScript010

literature-search

Crawl and annotate pubmed articles with variants

Language:Jupyter Notebook010

Mailspring-Theme-Starter

A starting point for creating your own custom Mailspring themes!

Language:CSSMIT010

pinemup

pin 'em up is a tool for placing small notes/post-its (e.g. TODOs/Reminders) on your desktop and organize them in various ways (categorize,hide,upload,export,...). Due to platform independence, the notes can also be shared on different operating systems.

Language:JavaGPL-3.0010

PrecisionMedicineToolkit

Search public databases for given genotypic information

Language:PythonMIT010

Publication-Figures-Web-Scraping

This tool provides a method for scrapping through NCBI's PubMed publications and retrieving the figures from open access and publicly available publications.

Language:JavaScriptGPL-2.0010