DPL-103 [Data fix] update date tested in mongo table for Newcastle samples

[Neil Sycamore]

date_tested is set to 2020 rather that 2021 (month/day etc OK)
affected plate barcodes are
separate story for lighthouse_samples table
ICHNE000046W
ICHNE000047W
ICHNE000048W
ICHNE000049W
ICHNE000050W
ICHNE000051W
ICHNE000052W
ICHNE000053W
ICHNE000054W
ICHNE000055W
ICHNE000056W
ICHNE000057W
ICHNE000058W
ICHNE000060W
ICHNE000061W
ICHNE000062W
ICHNE000063W
ICHNE000064W
ICHNE000065W
ICHNE000066W
ICHNE000067W
ICHNE000068W
ICHNE000069W
ICHNE000070W

[Stuart McHattie]

In order to fix these samples, I will be using the following Python script with the correct database constants. @emrojo Do you agree these these are the commands we want to perform?

from datetime import datetime

from pymongo import MongoClient

MONGO_URI = "mongodb://localhost:27017/?readPreference=primary&ssl=false"
MONGO_DB = "lighthouseDevelopmentDB"
MONGO_COLLECTION = "samples"

client = MongoClient(MONGO_URI)
database = client[MONGO_DB]
samples_collection = database[MONGO_COLLECTION]

affected_samples = samples_collection.find(
    {"source": "Newcastle", "Date Tested": {"$lt": datetime(2021, 1, 1, 0, 0, 0)}}
)

for sample in affected_samples:
    sample_id = sample["_id"]
    updated_date_tested = sample["Date Tested"].replace(year=2021)
    samples_collection.update_one({"_id": sample_id}, {"$set": {"Date Tested": updated_date_tested}})

[Eduardo Martín Rojo]

Ok, code reviewed

[KatyTaylor]

Closing this, as it's in the Done column